Manatee

Option K is selected

Example manatee database installation when "K" is chosen

[SHELL]$ perl Makefile.PL PREFIX=/usr/local/apache2
Added to MANIFEST: lookup_files/coding_hmm.lib.db.gz
Added to MANIFEST: lookup_files/ec2go.db.gz
Added to MANIFEST: lookup_files/hmm_go.db.gz
Added to MANIFEST: lookup_files/pfam2role.db.gz
Added to MANIFEST: lookup_files/prosite.db.gz
Added to MANIFEST: lookup_files/role_data.db.gz
Added to MANIFEST: lookup_files/tchar.db.gz
Added to MANIFEST: lookup_files/tigrfam2role.db.gz
Added to MANIFEST: Makefile.PL
Added to MANIFEST: Manatee_database_installation.txt
Added to MANIFEST: MANIFEST
Added to MANIFEST: mysql/cgsp.ddl.gz
Added to MANIFEST: perform_analyze_or_check_database.pl

Please enter where do you want to store mysql_data:/usr/local/mysql/mysql/mysql_data/

Please enter the mysql USERNAME :usrABC

Please enter the mysql PASSWORD :pwdXYZ

Please enter the mysql SERVER/HOST name :USER-host.server.edu

Please enter the directory where you want to store the LOOKUP FILES :/usr/local/apache2/databases/lookup_files/

You already have cgsp database in your mysql.
- Please enter "Y" if you want to backup the existing cgsp database and install the new cgsp database.
- Please enter "K" if you want to leave the existing cgsp database as it is.
- Please enter "N" if you want to install a new copy of cgsp database

Please enter your option here :K
Checking if your kit is complete...
Looks good
Writing Makefile for Manatee

[SHELL]$ make install
....Copying mysql databases to /usr/local/mysql/mysql/mysql_data/
....CGSP test database is not installed.
....Performing "ANALYZE" on the databases (this may take a while)...
Performing "Analyze" on the database "cgsp"...
Done !!!

....Installing database lookup files to /usr/local/apache2/databases/lookup_files/
[SHELL]$